Common Force Field Thermodynamics of Cholesterol

Common Force Field Thermodynamics of Cholesterol

Four different force fields are examined for dynamic characteristics using cholesterol as a case study. The extent to which various types of internal degrees of freedom become thermodynamically relevant is evaluated by means of principal component analysis. More complex degrees of freedom (angle bending, dihedral rotations) show a trend towards force field independence. Moreover, charge assignm...

Ion solvation thermodynamics from simulation with a polarizable force field.

Thermodynamic measurements of the solvation of salts and electrolytes are relatively straightforward, but it is not possible to separate total solvation free energies into distinct cation and anion contributions without reference to an additional extrathermodynamic assumption. The present work attempts to resolve this difficulty using molecular dynamics simulations with the AMOEBA polarizable f...

Iterative Force-Field Calculation and Molecular Dynamics of Cyclooctanone

Body's iterative force-field computer program has been used to calculate strain energies in cyclooctanone (I). 348 MHZ 1H NMR spectra of (I) have been investigated over the temperature range of 25° to -160°C. Two conformation processes affect the 1H NMR spectrum of (I). Iterative force-field calculations on the conformations and conformational interconversion paths of ...

Reconstruction of Solar Coronal Linear Force-Free Magnetic Field

Molecular Mechanics . The MM 3 Force Field for Hydrocarbons . 2 . Vibrational Frequencies and Thermodynamics *

In the development of the MM3 force field, vibrational frequencies were considered for a set of eight relatively simple hydrocarbons. The 213 observed experimental frequencies over this set were fit to within a root-mean-square error of 35 cm-I, of which the largest errors occur in the CC-H bending frequencies. The torsional frequencies are generally calculated to a much higher accuracy, which ...